STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3954Identified by match to protein family HMM PF00034. (468 aa)    
Predicted Functional Partners:
RC1_0942
Hemolysin activation; Identified by match to protein family HMM PF01323.
 
    0.540
RC1_2549
Hypothetical protein; Identified by Glimmer2 putative.
 
    0.520
RC1_3953
Radical SAM domain protein; Identified by match to protein family HMM PF01266 match to protein family HMM PF01593.
       0.460
RC1_0751
Conserved hypothetical protein; Identified by match to protein family HMM PF04333.
  
     0.456
RC1_3809
PepSY-associated TM helix, putative; Identified by match to protein family HMM PF00908 match to protein family HMM TIGR01221.
 
    0.434
RC1_1665
HAMP domain protein; Identified by match to protein family HMM PF02545 match to protein family HMM TIGR00172.
  
     0.432
RC1_1790
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.421
RC1_0572
Conserved domain protein; Identified by match to protein family HMM PF02779 match to protein family HMM PF02780 match to protein family HMM TIGR00204.
  
     0.411
RC1_0747
Conserved domain protein.
  
     0.411
yghQ
Inner membrane protein YghQ, putative; Identified by match to protein family HMM PF01196 match to protein family HMM TIGR00059.
  
     0.409
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.