STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3956Oxidoreductase, short chain dehydrogenase; Identified by match to protein family HMM PF07992; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (325 aa)    
Predicted Functional Partners:
RC1_3985
Oxidoreductase, short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.677
RC1_3955
Uracil DNA glycosylase superfamily; Identified by match to protein family HMM PF00989 match to protein family HMM PF00990 match to protein family HMM TIGR00229 match to protein family HMM TIGR00254.
       0.512
RC1_1449
Oxidoreductase, short chain dehydrogenase; Identified by match to protein family HMM PF00072.
  
 
   0.475
RC1_1742
Conserved hypothetical protein; Identified by match to protein family HMM PF00106 match to protein family HMM PF01370.
  
     0.424
RC1_2468
Streptomyces cyclase; Identified by match to protein family HMM PF00355 match to protein family HMM TIGR01409 match to protein family HMM TIGR01416.
 
     0.421
RC1_3596
General stress protein, putative; Also called pyridoxamine 5'-phosphate oxidase.
 
    0.410
RC1_2649
Zinc-type alcohol dehydrogenase, putative.
 
  
 0.409
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.