STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3959Conserved hypothetical protein; Identified by match to protein family HMM PF01048 match to protein family HMM TIGR01717. (150 aa)    
Predicted Functional Partners:
RC1_3958
Integral membrane protein, putative; Identified by match to protein family HMM PF01103 match to protein family HMM PF07244.
 
  
 0.992
RC1_3957
Exported protein, putative; Also matched to PF03401 identified by match to protein family HMM PF04357.
 
  
 0.988
RC1_3960
Hypothetical protein; Identified by Glimmer2 putative.
       0.773
RC1_1767
Ammonia monooxygenase, putative.
 
    0.688
RC1_3660
Conserved hypothetical protein; Identified by match to protein family HMM PF00116 match to protein family HMM PF02790 match to protein family HMM TIGR02866.
  
     0.510
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.504
RC1_0253
Nucleoside 2-deoxyribosyltransferase, putative; Identified by match to protein family HMM PF02653.
  
     0.477
RC1_0151
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.411
RC1_3964
Conserved hypothetical protein.
 
     0.411
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.