STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3997Methyltransferase, putative; Identified by match to protein family HMM PF00300 match to protein family HMM TIGR01258. (438 aa)    
Predicted Functional Partners:
RC1_3995
Conserved hypothetical protein; Identified by match to protein family HMM PF00583.
 
     0.944
rfbF-3
Glucose-1-phosphate cytidylyltransferase, putative.
 
    0.871
RC1_3992
NAD dependent epimerase; Identified by match to protein family HMM PF07331.
     0.777
RC1_3774
Cephalosporin hydroxylase, putative; Identified by match to protein family HMM PF01656.
 
     0.764
RC1_3986
Conserved hypothetical protein; Identified by match to protein family HMM PF04055.
 
 
   0.749
RC1_3775
NAD dependent epimerase; Identified by match to protein family HMM PF02195 match to protein family HMM TIGR00180.
 
     0.604
RC1_3994
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00180 match to protein family HMM TIGR00169.
 
     0.510
RC1_3998
Methyltransferase, FkbM family, putative.
       0.455
bchD
Magnesium-chelatase subunit D; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 
 0.417
RC1_3999
Signal transduction histidine kinase, putative; Contains PF02518 identified by match to protein family HMM PF03969.
 
     0.410
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.