STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_3999Signal transduction histidine kinase, putative; Contains PF02518 identified by match to protein family HMM PF03969. (252 aa)    
Predicted Functional Partners:
RC1_1592
Response regulator receiver domain protein; Identified by match to protein family HMM PF01084 match to protein family HMM TIGR00165.
 
 
 0.994
barA
Signal transduction histidine-protein kinase BarA; Identified by match to protein family HMM PF01887.
  
 
 0.985
RC1_0351
Multi-sensor hybrid histidine kinase, putative; Identified by match to protein family HMM PF01740.
 
 
 0.942
hdpA
Hybrid phosphotransfer protein, HdpA; [contains] response regulator receiver domain; PAS domain S-box; identified by match to protein family HMM PF00072 match to protein family HMM PF01339.
  
 
 0.931
cckA
Cell cycle histidine kinase CckA; Sensory box histidine kinase.
  
 
 0.931
RC1_3342
Complexhybrid Signal Transduction Protein.
  
 
 0.931
RC1_3878
Chemotaxis protein methyltransferase, putative; Name variations include MCP methyltransferase.
 
  
 0.929
RC1_2159
Histidine-containing phosphotransfer (HPt) domain protein.
  
 
 0.921
RC1_3033
Sensor protein torS, putative.
  
 
 0.921
cheAY
Chemotaxis protein CheA (C terminus homologous to cheY); Also called histidine kinase; identified by match to protein family HMM PF06808 match to protein family HMM TIGR00786.
  
 
 0.919
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.