STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_4003Conserved hypothetical protein; Identified by match to protein family HMM PF00117 match to protein family HMM PF00958 match to protein family HMM PF06508 match to protein family HMM TIGR00884 match to protein family HMM TIGR00888. (409 aa)    
Predicted Functional Partners:
exoP-2
Succinoglycan biosynthesis transport protein ExoP; Identified by match to protein family HMM PF01814.
 
   
 0.853
RC1_4004
Polysaccharide biosynthesis; Identified by match to protein family HMM PF00583.
 
     0.851
exoP
Succinoglycan biosynthesis transport protein ExoP, putative; Identified by match to protein family HMM PF04209.
 
   
 0.801
RC1_1410
Polysaccharide biosynthesis.
 
     0.763
RC1_4024
Transmembrane protein, putative; Identified by match to protein family HMM PF04892.
 
     0.660
RC1_1839
Conserved hypothetical protein; Identified by match to protein family HMM PF01791.
  
     0.557
RC1_0258
Thioesterase family protein.
  
     0.424
wcaJ
Colanic biosynthesis UDP-glucose lipid carrier transferase, putative.
 
     0.416
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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