Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
RC1_4036Cytochrome D ubiquinol oxidase, subunit I; Identified by match to protein family HMM PF00534. (523 aa)    
Predicted Functional Partners:
cydB
Cytochrome D ubiquinol oxidase, subunit II; Identified by match to protein family HMM PF02563.
 0.999
cioB
Ubiquinol oxidase subunit II, cyanide insensitive; Identified by match to protein family HMM PF00289 match to protein family HMM PF00364 match to protein family HMM PF02222 match to protein family HMM PF02785 match to protein family HMM PF02786.
 
 0.996
ybgT
Cyd operon protein YbgT.
 
 0.996
RC1_0285
Quinol oxidase, subunit II, putative; Identified by match to protein family HMM PF02830 match to protein family HMM TIGR02019.
 0.995
cydC
ABC transporter, ATP-binding protein CydD, pseudogene;identified by match to protein family HMM PF02706.
 
  
 0.921
RC1_0287
Quinol oxidase subunit I, putative.
  
  
 
0.914
cioA
Ubiquinol oxidase subunit I, cyanide insensitive; Identified by match to protein family HMM PF00708.
  
  
 
0.914
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
  
 0.520
petB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 0.490
coxA
Cytochrome c oxidase, subunit I (Heme/copper-type cytochrome/quinol oxidase); Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
 0.422
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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