Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
RC1_4100Conserved hypothetical protein; Identified by match to protein family HMM PF00702 match to protein family HMM TIGR01509. (881 aa)    
Predicted Functional Partners:
RC1_3414
DUF58 domain-containing protein; Double-transmembrane region pseudogene;identified by match to protein family HMM PF01863.
  
   
 0.777
RC1_3411
Conserved hypothetical protein; Identified by match to protein family HMM PF00162.
  
     0.774
RC1_1027
Beta-glucosidase-like protein.
 
  
 0.767
RC1_1535
Conserved hypothetical protein; Identified by match to protein family HMM PF03652 match to protein family HMM TIGR00250.
  
     0.731
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.721
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.700
RC1_0810
Hypothetical protein; Identified by Glimmer2 putative.
   
   0.692
RC1_1127
Phage tail tape measure protein, TP901 family, core region; Part of the putative prophage RcenMu genome.
   
   0.692
argH
Argininosuccinate lyase; Identified by match to protein family HMM PF00908 match to protein family HMM TIGR01221.
       0.692
tolB
Protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   0.680
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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