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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_4100Conserved hypothetical protein; Identified by match to protein family HMM PF00702 match to protein family HMM TIGR01509. (881 aa)    
Predicted Functional Partners:
RC1_3414
DUF58 domain-containing protein; Double-transmembrane region pseudogene;identified by match to protein family HMM PF01863.
  
   
 0.775
RC1_3411
Conserved hypothetical protein; Identified by match to protein family HMM PF00162.
  
     0.774
RC1_1027
Beta-glucosidase-like protein.
 
  
 0.768
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.733
RC1_1535
Conserved hypothetical protein; Identified by match to protein family HMM PF03652 match to protein family HMM TIGR00250.
  
     0.731
argH
Argininosuccinate lyase; Identified by match to protein family HMM PF00908 match to protein family HMM TIGR01221.
     
 0.709
RC1_1623
Conserved hypothetical protein; Identified by match to protein family HMM PF05960.
  
     0.671
tolB
Protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.666
RC1_2570
Conserved hypothetical protein.
  
 
 0.666
RC1_4102
Conserved hypothetical protein; Identified by match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF04321 match to protein family HMM PF07993 match to protein family HMM TIGR01214.
       0.618
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.