Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RC1_4113Nudix family protein, putative; Identified by match to protein family HMM PF00561 match to protein family HMM TIGR01392. (292 aa)    
Predicted Functional Partners:
RC1_4112
Hypothetical protein; Identified by Glimmer2 putative.
       0.566
RC1_4111
ATP:cob(I)alamin adenosyltransferase, putative; Identified by match to protein family HMM PF05239; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.516
RC1_2428
Conserved hypothetical protein; Identified by match to protein family HMM PF00106.
 
     0.459
mreD
Rod shape-determining protein MreD, putative.
  
     0.414
bolA
BolA protein; Identified by match to protein family HMM PF01649 match to protein family HMM TIGR00029; Belongs to the BolA/IbaG family.
  
     0.410
RC1_0964
Conserved hypothetical protein.
 
   
 0.400
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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