STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_4114Conserved hypothetical protein; Identified by match to protein family HMM PF01817. (159 aa)    
Predicted Functional Partners:
RC1_2163
Conserved hypothetical protein.
  
     0.744
cheZ-3
Chemotaxis protein CheZ, putative.
  
     0.742
RC1_1435
Conserved hypothetical protein; Identified by match to protein family HMM PF00146.
  
     0.722
RC1_0215
Tetratricopeptide TPR_2 (cell wall/envelope/membrane biosynthesis); Identified by Glimmer2 putative.
  
     0.692
RC1_2289
Conserved hypothetical protein; Identified by match to protein family HMM PF00072.
  
     0.665
RC1_1423
Hypothetical protein; Identified by Glimmer2 putative.
  
     0.662
fliH
Flagellar assembly protein FliH, putative; Identified by match to protein family HMM PF01706 match to protein family HMM TIGR00207.
  
     0.645
RC1_0885
Tetratricopeptide TPR_2 (cell wall/envelope/membrane biosynthesis); Identified by match to protein family HMM PF04168 match to protein family HMM PF04169 match to protein family HMM PF04174.
  
     0.640
RC1_0174
Conserved hypothetical protein.
  
     0.636
fliH-2
Flagellar assembly protein FliH, putative; Export component negative regulator of FliI cytoplasmic; identified by match to protein family HMM PF00994 match to protein family HMM PF03453 match to protein family HMM PF03454 match to protein family HMM TIGR00177.
  
     0.632
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.