Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFK26020.1TIGR02301 family protein. (153 aa)    
Predicted Functional Partners:
SFK25999.1
Hypothetical protein.
 
     0.881
SFK26039.1
ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family.
       0.858
SFK26061.1
Hypothetical protein.
       0.858
SFK26083.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.846
SFK55630.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.773
SFK46364.1
Hypothetical protein.
  
     0.773
SFL08396.1
Hypothetical protein.
  
     0.773
SFK48085.1
Hypothetical protein.
  
     0.772
SFK48116.1
Uncharacterized membrane protein.
  
     0.772
SFL62640.1
Hypothetical protein.
  
     0.772
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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