Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFK26521.1Hypothetical protein. (204 aa)    
Predicted Functional Partners:
SFK26542.1
DNA-binding transcriptional regulator, MarR family.
 
     0.955
SFL78311.1
Protein of unknown function.
  
     0.660
SFK26564.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.631
SFL84949.1
Pilus assembly protein Flp/PilA.
  
     0.593
SFK37790.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
  
     0.578
SFL82561.1
PilZ domain-containing protein.
  
     0.550
SFL36869.1
Hypothetical protein.
  
     0.548
SFK76573.1
Hypothetical protein.
  
     0.545
SFL24454.1
Esterase/lipase superfamily enzyme.
  
     0.538
SFL63220.1
AsmA protein.
  
     0.503
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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