Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFK27668.1Hypothetical protein. (91 aa)    
Predicted Functional Partners:
SFK85487.1
Tartronate-semialdehyde synthase; Belongs to the TPP enzyme family.
  
 
 0.662
SFK27693.1
DNA-binding transcriptional regulator, GntR family.
       0.623
SFK93792.1
Serine-glyoxylate aminotransferase apoenzyme.
  
  
  0.523
SFL50382.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
  0.491
SFK89041.1
2-hydroxy-3-oxopropionate reductase.
  
 
 0.482
SFK85447.1
2-hydroxy-3-oxopropionate reductase.
  
 
 0.482
SFL33684.1
3-hydroxyisobutyrate dehydrogenase.
  
 
 0.482
SFK45325.1
Sugar phosphate isomerase/epimerase.
    
 0.421
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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