Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFK27720.1Sugar phosphate permease. (433 aa)    
Predicted Functional Partners:
SFL58723.1
NAD(P)H-nitrite reductase, large subunit.
 
  
 0.733
SFK27693.1
DNA-binding transcriptional regulator, GntR family.
 
     0.578
SFM05858.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
    
 0.482
SFL77368.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
  
 0.461
SFK46907.1
Predicted arabinose efflux permease, MFS family.
  
  
  0.423
SFL34737.1
Predicted arabinose efflux permease, MFS family.
  
  
0.422
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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