Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SFK45407.1Uracil-DNA glycosylase. (213 aa)    
Predicted Functional Partners:
SFK45378.1
N-acetylglucosaminyl deacetylase, LmbE family.
 
     0.889
SFK35545.1
DNA polymerase.
     
  0.870
SFK46558.1
DNA polymerase.
     
  0.870
SFK45297.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
     0.854
SFK45350.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.790
SFK45325.1
Sugar phosphate isomerase/epimerase.
 
   
 0.727
SFK45434.1
Hypothetical protein.
       0.655
SFL24898.1
Hypothetical protein.
  
     0.655
SFL12561.1
Protein of unknown function.
  
     0.604
SFK99121.1
Putative membrane protein.
  
     0.598
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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