Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFK48739.1Hypothetical protein. (353 aa)    
Predicted Functional Partners:
SFL29681.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.762
SFK48765.1
Hypothetical protein.
       0.760
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.760
SFK48713.1
Thioredoxin reductase (NADPH).
       0.677
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
       0.570
SFK46719.1
O-antigen ligase.
 
     0.564
SFK37711.1
Hypothetical protein.
  
     0.524
SFL43849.1
Lipopolysaccharide export system permease protein.
 
     0.501
SFK31119.1
Hypothetical protein.
  
     0.489
SFK54681.1
Protein tyrosine/serine phosphatase.
  
     0.457
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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