Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFK50132.1Short-chain fatty acids transporter. (476 aa)    
Predicted Functional Partners:
SFK50106.1
4-carboxymuconolactone decarboxylase.
       0.769
SFK34813.1
H+/gluconate symporter.
 
   
 0.622
SFL63273.1
3-oxoacid CoA-transferase subunit B.
 
  
 0.613
SFK50159.1
Serine/threonine protein phosphatase 1.
       0.543
SFL63244.1
3-oxoacid CoA-transferase subunit A.
 
  
 0.537
SFL74596.1
Uncharacterized short protein YbdD, DUF466 family.
  
     0.504
SFL74621.1
Carbon starvation protein.
  
     0.446
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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