STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK55881.1Hypothetical protein. (166 aa)    
Predicted Functional Partners:
SFK39818.1
Hint domain-containing protein.
  
  0.785
SFK47420.1
Collagen triple helix repeat-containing protein.
  
  0.785
SFK70171.1
Hypothetical protein.
  
  0.785
SFL35574.1
Chemotaxis protein MotC.
  
  0.785
SFL43659.1
Autotransporter-associated beta strand repeat-containing protein.
  
  0.785
SFL93387.1
Hypothetical protein.
  
  0.785
SFK71217.1
Homoserine dehydrogenase.
    
  0.658
SFK57996.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
   
  0.654
SFK55946.1
Zn-dependent protease with chaperone function.
     
 0.636
SFK55913.1
Hypothetical protein.
       0.594
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.