Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SFK56744.1HAMP domain-containing protein. (548 aa)    
Predicted Functional Partners:
SFK56718.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
 0.982
SFL06486.1
PAS domain S-box-containing protein.
 
0.928
SFL38841.1
PAS domain S-box-containing protein.
 
 
0.894
SFL71628.1
PAS domain S-box-containing protein.
 
 
0.893
SFL63346.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 
0.873
SFK76788.1
PAS domain S-box-containing protein.
 
 
0.849
SFK88657.1
PAS domain S-box-containing protein.
 
 
 0.847
SFL28865.1
PAS domain S-box-containing protein.
 
 
0.842
SFK92251.1
PAS domain S-box-containing protein.
 
 
0.839
SFK26388.1
PAS domain S-box-containing protein.
 
 
 0.820
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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