Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SFK57406.1PQQ-dependent catabolism-associated beta-propeller protein. (328 aa)    
Predicted Functional Partners:
SFK57508.1
ABC-2 type transport system permease protein.
 
  
 0.945
SFK57479.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.941
SFK57432.1
Hypothetical protein.
 
    0.923
SFK57381.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
    0.902
SFK57538.1
Hypothetical protein.
 
     0.850
SFL05562.1
Cytochrome c-550 PedF.
 
  0.843
SFL88937.1
Cytochrome c-550 PedF.
 
  0.837
SFL05584.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-).
 
    0.815
SFK93492.1
NitT/TauT family transport system substrate-binding protein.
 
    0.805
SFL05516.1
Alcohol dehydrogenase (cytochrome c).
 
 
  0.800
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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