Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SFK46719.1O-antigen ligase. (402 aa)    
Predicted Functional Partners:
SFK46747.1
Hypothetical protein.
 
     0.886
SFK46699.1
NADPH-glutathione reductase.
       0.858
SFK33802.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.828
SFL30906.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.828
SFK71328.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.789
SFL35098.1
Heparinase II/III-like protein.
 
     0.776
SFK96027.1
Hypothetical protein.
  
    0.752
SFL16985.1
AsmA-like C-terminal region.
  
  
 0.746
SFL02597.1
Hypothetical protein.
  
     0.740
SFL23439.1
Protein of unknown function.
 
     0.724
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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