Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFK46747.1Hypothetical protein. (190 aa)    
Predicted Functional Partners:
SFK46719.1
O-antigen ligase.
 
     0.886
SFK46699.1
NADPH-glutathione reductase.
       0.858
SFL14039.1
Porin subfamily protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.771
SFL45943.1
Porin subfamily protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.769
SFK95868.1
Hypothetical protein.
  
     0.768
SFK46364.1
Hypothetical protein.
  
     0.765
SFK35361.1
Hypothetical protein.
  
     0.763
SFK48358.1
Hypothetical protein.
  
     0.760
SFK37764.1
Chromosome segregation ATPase.
  
     0.759
SFK48116.1
Uncharacterized membrane protein.
  
     0.756
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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