STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK45269.1Predicted dehydrogenase. (341 aa)    
Predicted Functional Partners:
SFK45325.1
Sugar phosphate isomerase/epimerase.
 
 
 0.987
SFL69692.1
Hypothetical protein.
 
    0.849
SFK45350.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.835
SFK45378.1
N-acetylglucosaminyl deacetylase, LmbE family.
 
  
 0.821
SFK45297.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
     0.817
SFK45242.1
Methyltransferase domain-containing protein.
  
   0.814
SFK45186.1
Myo-inositol-1-phosphate synthase.
 
   
 0.810
SFL33480.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.782
SFK88621.1
Sugar lactone lactonase YvrE.
 
 
 0.776
SFL93500.1
Predicted dehydrogenase.
  
     0.760
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.