Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFK63235.1 | SFK63260.1 | SAMN04488125_10321 | SAMN04488125_10322 | Sulfur carrier protein. | Glycine oxidase. | 0.972 |
SFK63235.1 | SFL29165.1 | SAMN04488125_10321 | SAMN04488125_11241 | Sulfur carrier protein. | Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. | 0.971 |
SFK63235.1 | SFL29867.1 | SAMN04488125_10321 | SAMN04488125_11280 | Sulfur carrier protein. | Adenylyltransferase and sulfurtransferase. | 0.989 |
SFK63235.1 | SFL61017.1 | SAMN04488125_10321 | SAMN04488125_11912 | Sulfur carrier protein. | Thiamine-phosphate pyrophosphorylase. | 0.946 |
SFK63235.1 | SFL87944.1 | SAMN04488125_10321 | SAMN04488125_12848 | Sulfur carrier protein. | ThiF family protein. | 0.990 |
SFK63235.1 | thiC | SAMN04488125_10321 | SAMN04488125_11260 | Sulfur carrier protein. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.926 |
SFK63235.1 | thiE | SAMN04488125_10321 | SAMN04488125_10319 | Sulfur carrier protein. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). | 0.988 |
SFK63235.1 | thiE-2 | SAMN04488125_10321 | SAMN04488125_11240 | Sulfur carrier protein. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.938 |
SFK63235.1 | thiG | SAMN04488125_10321 | SAMN04488125_10320 | Sulfur carrier protein. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
SFK63235.1 | tilS | SAMN04488125_10321 | SAMN04488125_11918 | Sulfur carrier protein. | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.917 |
SFK63260.1 | SFK63235.1 | SAMN04488125_10322 | SAMN04488125_10321 | Glycine oxidase. | Sulfur carrier protein. | 0.972 |
SFK63260.1 | SFL29165.1 | SAMN04488125_10322 | SAMN04488125_11241 | Glycine oxidase. | Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. | 0.460 |
SFK63260.1 | SFL29867.1 | SAMN04488125_10322 | SAMN04488125_11280 | Glycine oxidase. | Adenylyltransferase and sulfurtransferase. | 0.434 |
SFK63260.1 | SFL87944.1 | SAMN04488125_10322 | SAMN04488125_12848 | Glycine oxidase. | ThiF family protein. | 0.434 |
SFK63260.1 | thiE | SAMN04488125_10322 | SAMN04488125_10319 | Glycine oxidase. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). | 0.916 |
SFK63260.1 | thiE-2 | SAMN04488125_10322 | SAMN04488125_11240 | Glycine oxidase. | Thiamine-phosphate diphosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.494 |
SFK63260.1 | thiG | SAMN04488125_10322 | SAMN04488125_10320 | Glycine oxidase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.995 |
SFL29165.1 | SFK63235.1 | SAMN04488125_11241 | SAMN04488125_10321 | Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. | Sulfur carrier protein. | 0.971 |
SFL29165.1 | SFK63260.1 | SAMN04488125_11241 | SAMN04488125_10322 | Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. | Glycine oxidase. | 0.460 |
SFL29165.1 | SFL29867.1 | SAMN04488125_11241 | SAMN04488125_11280 | Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. | Adenylyltransferase and sulfurtransferase. | 0.855 |
page 1 of 5