Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SFK68841.1Hypothetical protein. (207 aa)    
Predicted Functional Partners:
SFL00522.1
NAD(P)H-dependent nitrite reductase flavoprotein subunit.
     
  0.598
SFL02453.1
FMN reductase.
 
 0.555
SFK68818.1
Hypothetical protein.
       0.543
SFK68865.1
Hypothetical protein.
       0.540
SFL58723.1
NAD(P)H-nitrite reductase, large subunit.
    
 0.512
SFK39503.1
Arsenical resistance protein ArsH.
  
 0.437
SFK98906.1
Arsenical resistance protein ArsH.
  
 0.437
SFL49771.1
NAD(P)H-dependent FMN reductase.
  
 0.437
SFL71100.1
Arsenical resistance protein ArsH.
  
 0.437
SFL26890.1
HxxPF-repeated domain-containing protein.
     
 0.423
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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