Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFK64704.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
SFK64727.1
TadE-like protein.
 
     0.939
SFL85111.1
Pilus assembly protein CpaE.
 
  
 0.928
SFK64672.1
Flp pilus assembly protein TadG.
 
    0.922
SFL85031.1
Pilus assembly protein CpaB.
 
  
 0.890
SFL85165.1
Tight adherence protein B.
 
  
 0.865
SFL85002.1
Prepilin peptidase CpaA.
 
  
 0.811
SFL85193.1
Tight adherence protein C.
 
    0.797
SFL85136.1
Pilus assembly protein CpaF.
 
  
 0.795
SFL85060.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.765
SFK37790.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
  
    0.753
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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