STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK80203.1TRAP transporter, DctM subunit. (450 aa)    
Predicted Functional Partners:
SFK80227.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 0.999
SFK80250.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
 0.991
SFM04582.1
Acyl transferase domain-containing protein.
   
 0.883
SFK68917.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 0.849
SFL26751.1
Putative tricarboxylic transport membrane protein.
  
  
  0.836
SFK80274.1
Transcriptional regulator, GntR family.
 
     0.801
SFL26731.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
  
  
  0.786
SFL26798.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
  
  
  0.771
SFL97351.1
TRAP transporter solute receptor, TAXI family.
  
  
  0.747
SFL81234.1
PAS domain S-box-containing protein.
     
 0.730
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.