Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFK76738.1Putative membrane protein. (354 aa)    
Predicted Functional Partners:
SFK76763.1
Hypothetical protein.
 
  
 0.995
SFK62881.1
Invasion protein IalB, involved in pathogenesis.
  
     0.697
SFL29641.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.666
SFK70095.1
Thioredoxin.
   
    0.651
SFK46364.1
Hypothetical protein.
  
     0.644
SFL01064.1
Invasion protein IalB, involved in pathogenesis.
  
     0.632
SFL62640.1
Hypothetical protein.
  
     0.626
SFL83625.1
Protein of unknown function.
  
     0.621
SFK63919.1
Penicillin-insensitive murein endopeptidase.
  
     0.613
SFK76815.1
O-antigen ligase like membrane protein.
 
     0.571
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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