Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFK87444.1Putative signal transducing protein. (77 aa)    
Predicted Functional Partners:
SFK87520.1
tRNA1(Val) A37 N6-methylase TrmN6.
       0.858
SFL41460.1
TIGR02302 family protein.
 
     0.666
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.622
SFK75843.1
N-terminal double-transmembrane domain-containing protein.
  
     0.613
SFK87420.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.601
SFK26830.1
Signal transduction histidine kinase.
  
     0.563
SFK75868.1
Uncharacterized membrane protein.
  
     0.547
SFK78008.1
NlpC/P60 family protein.
 
     0.520
SFK31053.1
BMFP domain-containing protein YqiC.
  
     0.465
SFL77892.1
Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
  0.429
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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