Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFK92341.1Hypothetical protein. (298 aa)    
Predicted Functional Partners:
SFK92317.1
Hypothetical protein.
 
     0.966
SFK89075.1
Hypothetical protein.
  
   0.863
SFK92299.1
Catechol 2,3-dioxygenase.
 
     0.618
SFL18583.1
Hypothetical protein.
  
   0.616
SFK79158.1
Phage conserved hypothetical protein, phiE125 gp8 family.
   
   0.590
SFK92363.1
Hypothetical protein.
       0.525
SFK92388.1
Hypothetical protein.
       0.525
SFK92409.1
Outer membrane immunogenic protein.
  
    0.493
SFK92277.1
Protein of unknown function.
 
     0.458
SFL38917.1
Nucleoid-associated protein YgaU, contains BON and LysM domains.
   
   0.447
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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