STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL00994.1Lysophospholipase L1. (290 aa)    
Predicted Functional Partners:
SFK79158.1
Phage conserved hypothetical protein, phiE125 gp8 family.
   
 0.821
SFL01019.1
Hypothetical protein.
       0.791
SFL44859.1
acyl-CoA thioesterase-1.
  
  
 
0.780
SFK30792.1
Lysophospholipase L1.
  
  
 
0.767
SFK32237.1
Hint domain-containing protein.
   
 0.760
SFK53543.1
Lysophospholipase L1.
   
 0.760
SFK84409.1
Hypothetical protein.
   
 0.760
SFK38837.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
     
 0.734
SFL01042.1
Cyclohexyl-isocyanide hydratase.
       0.671
SFK27603.1
FAD/FMN-containing dehydrogenase.
 
  
  0.453
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.