Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SFK99977.1Lipoprotein-anchoring transpeptidase ErfK/SrfK. (282 aa)    
Predicted Functional Partners:
SFK99958.1
Hypothetical protein.
       0.823
SFK99995.1
Protein-disulfide isomerase.
 
   
 0.805
SFL30717.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.777
SFK47550.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.748
SFL00014.1
Thiol:disulfide interchange protein DsbD.
       0.727
SFL94924.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
  
     0.686
SFL62518.1
L,D-transpeptidase catalytic domain.
 
   
 0.593
SFL00055.1
Two-component system, OmpR family, sensor histidine kinase QseC.
 
     0.578
SFL02195.1
Transglycosylase SLT domain-containing protein.
  
     0.552
SFK76738.1
Putative membrane protein.
  
     0.483
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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