Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
SFL00468.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
SFL00488.1
Allophanate hydrolase.
 
     0.714
SFK30092.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.703
SFL54191.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.697
SFK64498.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.684
SFK85510.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.684
SFL90059.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.665
SFK58392.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.644
SFL85853.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.635
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.590
SFL25477.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.587
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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