STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL12977.1Transcriptional regulator, MucR family. (148 aa)    
Predicted Functional Partners:
SFK53446.1
TIGR02300 family protein.
  
     0.592
SFL06707.1
ATP-dependent helicase/nuclease subunit B.
  
     0.559
SFL12998.1
Restriction system protein.
       0.539
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.538
SFL13824.1
Uncharacterized conserved protein, UPF0335 family; Belongs to the UPF0335 family.
  
     0.478
SFL86744.1
Hypothetical protein; Belongs to the UPF0235 family.
  
     0.468
SFL28733.1
DNA polymerase III, chi subunit.
  
     0.467
SFK95278.1
Beta-barrel assembly machine subunit BamE.
  
     0.446
SFK88866.1
Hypothetical protein.
  
     0.442
SFL48747.1
Uncharacterized SAM-binding protein YcdF, DUF218 family.
  
     0.419
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.