Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFL10818.1Omega-6 fatty acid desaturase (delta-12 desaturase). (358 aa)    
Predicted Functional Partners:
SFL89966.1
Hypothetical protein.
  
 
 0.856
SFK92922.1
Ferredoxin-NADP reductase.
  
 
 0.829
SFL65330.1
Ferredoxin-NADP reductase.
  
 
 0.829
SFM04582.1
Acyl transferase domain-containing protein.
  
 
 0.719
rsgA
Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
     0.588
SFK47218.1
Protein of unknown function.
   
    0.553
SFM04714.1
Squalene-associated FAD-dependent desaturase.
     
 0.550
SFL10799.1
Hypothetical protein.
       0.512
SFK49476.1
Nitric oxide dioxygenase; Belongs to the globin family.
  
 
 0.509
SFL07555.1
Adenylate cyclase.
  
 
 0.468
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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