Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL12410.1Opacity protein. (299 aa)    
Predicted Functional Partners:
SFL61461.1
Protein of unknown function.
  
     0.768
SFK51670.1
Hypothetical protein.
  
     0.763
SFK70861.1
Hypothetical protein.
  
     0.762
SFK48116.1
Uncharacterized membrane protein.
  
     0.757
SFL63220.1
AsmA protein.
  
   
 0.754
SFL41361.1
Hypothetical protein.
  
   
 0.743
SFL23439.1
Protein of unknown function.
  
     0.740
SFL45044.1
Predicted membrane protein.
  
     0.739
SFL52038.1
Effector-binding domain-containing protein.
  
     0.719
SFK55851.1
Hypothetical protein.
  
     0.718
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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