Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL18519.1Hypothetical protein. (115 aa)    
Predicted Functional Partners:
SFL18540.1
Hypothetical protein.
       0.833
SFL18495.1
Hypothetical protein.
       0.828
SFL18559.1
Bacteriophage related protein of unknown function.
       0.801
SFL18475.1
Hypothetical protein.
       0.773
SFL18583.1
Hypothetical protein.
       0.576
SFL18452.1
Hypothetical protein.
       0.516
SFL18621.1
Hypothetical protein.
       0.430
SFL18601.1
Hypothetical protein.
       0.404
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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