Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL34274.1Hypothetical protein. (74 aa)    
Predicted Functional Partners:
SFL41338.1
Hypothetical protein.
  
   
 0.773
SFL41289.1
Histidine phosphotransferase ChpT.
  
     0.751
SFK26702.1
Protein of unknown function.
  
     0.739
SFK55630.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
   
 0.725
SFK64541.1
Uncharacterized membrane protein.
  
     0.724
SFK49948.1
Regulator of CtrA degradation.
  
     0.715
SFL62640.1
Hypothetical protein.
  
     0.704
SFL11371.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
  
     0.702
SFK46364.1
Hypothetical protein.
  
     0.697
SFK48085.1
Hypothetical protein.
  
     0.687
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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