Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL40655.1Phage-related protein. (118 aa)    
Predicted Functional Partners:
SFL40683.1
Helix-turn-helix domain-containing protein.
 
     0.957
SFL26160.1
Helix-turn-helix.
 
 
 0.849
SFL80002.1
Predicted transcriptional regulator, contains an HTH and PUA-like domains.
  
 
 0.824
SFL23358.1
Probable addiction module antidote protein.
 
     0.578
SFL40606.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
       0.574
SFL40630.1
Hypothetical protein.
       0.574
SFL23339.1
Putative addiction module killer protein.
  
     0.532
SFL02615.1
Addiction module antidote protein, HigA family.
 
     0.441
SFL40578.1
Hypothetical protein.
       0.425
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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