STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL51984.1Spore photoproduct lyase. (365 aa)    
Predicted Functional Partners:
SFK74988.1
UV-damage endonuclease.
  
   
 0.704
SFL31719.1
Mn-containing catalase.
  
     0.658
SFK38697.1
2'-5' RNA ligase superfamily protein.
 
     0.646
SFK29560.1
Mn-containing catalase (includes spore coat protein CotJC).
  
     0.623
SFL80447.1
Hypothetical protein.
  
     0.591
SFK45297.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
     0.547
SFL50470.1
Protein of unknown function.
  
     0.545
SFL51953.1
Hypothetical protein.
       0.533
SFK45350.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.516
SFK84644.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.466
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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