Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFL52644.1HlyD family secretion protein. (448 aa)    
Predicted Functional Partners:
SFL52545.1
ATP-binding cassette, subfamily C.
 
  
 0.957
SFK84461.1
ATP-binding cassette, subfamily B.
 
 0.838
SFK84336.1
Putative ABC transport system ATP-binding protein.
 
 0.829
SFK85147.1
Outer membrane protein.
 
 0.816
SFK28345.1
ATP-binding cassette, subfamily B, RaxB.
  
 0.809
SFL93178.1
ATP-binding cassette, subfamily C.
 
  
 0.809
SFL68513.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 0.742
SFL80334.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 0.742
SFL25145.1
Hemolysin-type calcium-binding repeat-containing protein.
 
 
 0.738
SFK54164.1
Hemolysin-type calcium-binding repeat-containing protein.
 
 
 0.737
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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