Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL62640.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
SFK55630.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.774
SFK46364.1
Hypothetical protein.
  
     0.774
SFK65426.1
Hypothetical protein.
  
     0.773
SFK26020.1
TIGR02301 family protein.
  
     0.772
SFK62881.1
Invasion protein IalB, involved in pathogenesis.
  
     0.771
SFL83625.1
Protein of unknown function.
  
     0.770
SFK64541.1
Uncharacterized membrane protein.
  
     0.768
SFL12322.1
Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain.
 
     0.768
SFL06594.1
Outer membrane immunogenic protein.
  
     0.766
SFL77710.1
Outer membrane immunogenic protein.
  
     0.765
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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