Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL65001.1Hypothetical protein. (47 aa)    
Predicted Functional Partners:
SFL65031.1
Phytoene synthase.
       0.773
SFL65066.1
Phytoene desaturase.
       0.773
SFL65095.1
Magnesium chelatase accessory protein.
       0.501
SFL65122.1
Magnesium chelatase subunit D.
       0.486
SFL65147.1
Hypothetical protein.
       0.486
SFL65177.1
Cold shock protein (beta-ribbon, CspA family).
       0.477
SFL64973.1
Flavin reductase.
       0.449
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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