Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL80250.1Transcriptional regulator, TetR family. (216 aa)    
Predicted Functional Partners:
SFL80281.1
Membrane fusion protein, multidrug efflux system.
 
   
 0.676
SFL80311.1
MFS transporter, DHA2 family, multidrug resistance protein; Belongs to the major facilitator superfamily.
       0.550
SFL80334.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
     
 0.516
SFL89966.1
Hypothetical protein.
  
 
 0.511
pth
peptidyl-tRNA hydrolase, PTH1 family; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.506
SFK92922.1
Ferredoxin-NADP reductase.
  
 
 0.490
SFL65330.1
Ferredoxin-NADP reductase.
  
 
 0.490
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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