Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL83625.1Protein of unknown function. (298 aa)    
Predicted Functional Partners:
SFK46364.1
Hypothetical protein.
  
     0.770
SFL62640.1
Hypothetical protein.
  
     0.770
SFK50848.1
Flagellar export protein FliJ.
  
     0.767
SFK26020.1
TIGR02301 family protein.
  
     0.765
SFK55630.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.764
SFK48116.1
Uncharacterized membrane protein.
  
     0.763
SFK69854.1
Predicted transglutaminase-like cysteine proteinase.
  
     0.762
SFK62881.1
Invasion protein IalB, involved in pathogenesis.
  
     0.762
SFL08396.1
Hypothetical protein.
  
     0.762
SFK37764.1
Chromosome segregation ATPase.
  
     0.761
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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