Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL86744.1Hypothetical protein; Belongs to the UPF0235 family. (94 aa)    
Predicted Functional Partners:
SFL86769.1
Hypothetical protein.
       0.634
SFL29240.1
YggT family protein.
 
  
 0.599
SFK37574.1
Transcriptional regulator, MucR family.
  
     0.513
SFL18109.1
Transcriptional regulator, MucR family.
  
     0.502
SFL81118.1
Transcriptional regulator, MucR family.
  
     0.493
SFL23941.1
Transcriptional regulator, MucR family.
  
     0.481
SFK88812.1
Transcriptional regulator, MucR family.
  
     0.479
SFL12977.1
Transcriptional regulator, MucR family.
  
     0.468
SFK65474.1
Transcriptional regulator, MucR family.
  
     0.451
SFL39632.1
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.428
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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