Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL86769.1Hypothetical protein. (198 aa)    
Predicted Functional Partners:
SFL22877.1
PilZ domain-containing protein.
  
     0.773
SFL84915.1
Pilus formation protein N terminal region.
  
     0.773
SFL85002.1
Prepilin peptidase CpaA.
  
     0.773
SFL85111.1
Pilus assembly protein CpaE.
  
     0.768
SFK76815.1
O-antigen ligase like membrane protein.
  
     0.764
SFL23587.1
Flp pilus assembly protein TadD, contains TPR repeats.
  
     0.760
SFL85087.1
Pilus assembly protein CpaD.
  
     0.756
SFK64727.1
TadE-like protein.
  
     0.755
SFK49948.1
Regulator of CtrA degradation.
  
     0.749
SFK69924.1
Hypothetical protein.
 
     0.743
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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