Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL89083.1Protein of unknown function. (115 aa)    
Predicted Functional Partners:
SFL89135.1
Hypothetical protein.
  
    0.946
SFL89106.1
Uncharacterized iron-regulated membrane protein.
  
    0.844
SFL38589.1
Hypothetical protein.
  
    0.775
SFL89168.1
Iron complex outermembrane recepter protein.
       0.774
SFL89197.1
FecR family protein.
  
    0.631
SFL89230.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
    0.420
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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