Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFL93721.1Hypothetical protein. (730 aa)    
Predicted Functional Partners:
SFL93692.1
O-antigen ligase like membrane protein.
       0.774
SFK79158.1
Phage conserved hypothetical protein, phiE125 gp8 family.
   
 0.745
SFK71248.1
Right handed beta helix region.
   
 0.698
SFK32237.1
Hint domain-containing protein.
  
 0.682
SFK53543.1
Lysophospholipase L1.
  
 0.682
SFK84409.1
Hypothetical protein.
  
 0.682
SFK38837.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
     
 0.643
SFK46206.1
Putative ABC transport system permease protein.
   
   0.598
SFL44883.1
Putative ABC transport system ATP-binding protein.
   
   0.598
ureB
Urease subunit gamma/beta; Belongs to the urease beta subunit family.
  
  
  0.563
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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