Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SFL92952.1Polysaccharide export outer membrane protein. (428 aa)    
Predicted Functional Partners:
SFL92918.1
Chain length determinant protein.
 
 0.988
SFK33466.1
Chain length determinant protein.
 
 0.980
SFK33696.1
Chain length determinant protein.
 
 0.972
SFK53472.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 0.966
SFL36314.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 0.955
SFK33802.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.833
SFL30906.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.833
SFK50679.1
Capsular polysaccharide transport system ATP-binding protein.
  
 
 0.829
SFL49445.1
Capsular polysaccharide transport system permease protein.
  
 
 0.829
SFK28037.1
Capsular polysaccharide transport system permease protein.
  
 
 0.784
Your Current Organism:
Methylorubrum salsuginis
NCBI taxonomy Id: 414703
Other names: CGMCC 1.6474, M. salsuginis, Methylobacterium salsuginis, Methylobacterium salsuginis Wang et al. 2007, NCCB 100140, NCIMB 14847, strain MR
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